Transcript Search Help

Seach target Description Example
Transcript Sequence Search
Prediction method Select prediction method. AUGUSTUS(fixed)
Transctipt ID Input Transctip ID.(partial-word search) Le_g1.t1 or Le
g1 = gene00001
t1 = transcript00001
Transcript Length Input length of Transcript sequences.(min max) min:100 max:200
Blast result Seach
Desctiption Input desctiption of hit protein in BLAST reslt.(partial-word search) predicted protein
Accession Input accession of hit protein in BLAST reslt.(partial-word search) YP_001734508
E-value Input max E-value. 1E-3 or 0.000000001
Identities Input min identites(%). 90
Alignment rate Input min alignment rate(%). 90
Kegg pathway Search
Species Input species name of hit pathway.(partial-word search) mmu
Map id Input KEGG map id.(partial-word search) 470
Name Input KEGG pathway name.(partial-word search) Metabolic
GO Search
GO id Input GO id of hit protein.(partial-word search) [GO: GO:0005524] ---< 5524
Term Input GO term of hit protein.(partial-word search) NA binding
Pfam result Search
Desctiption Input desctiption of pfam hit protein.(partial-word search) kinase
E-Value Input max E-value. 1E-5 or 0.00005